Plant MITE

SE2810503

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9508
Sorghum bicolor
SE2810503
Tc1/Mariner
St13
chromosome_9:970539-970777
TA
TACTCTCTTCATCCCAAATTATAAGTCGTTTGACTTTTTTAACTTTAAGTTTGATCACTCGTCTTATTCAAAACATTTGTGCAAA

Secondary structure and sequence

TSD TIR

5'

3'

     TC       C          T                CT             C          C    CA          CATAGTTAAATTTAA         GTAGAACTTTTATTAAT
TACTC  TTCATCC AAATTATAAG CGTTTGACTTTTTTAA  TTAAGTTTGATCA TCGTCTTATT AAAA  TTTGTGCAAA               GTCATTTTT                 
|||||  ||||||| |||||||||| ||||||||||||||||  ||||||||||||| |||||||||| ||||  ||||||||||               |||||||||                 A
ATGAG  AGGTAGG TTTAATATTC GCAAACTGAAAAAATT  GGTTTAAACTGGT AGCAGAATAA TTTT  AAACATGTTT               TAGTGAAGA                 
     TT       A          T                AT             A          A    -C          -------------TA         AAACAGCACCGAACCAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810503

TACTCTCTTCATCCCAAATTATAAGTCGTTTGACTTTTTTAACTTTAAGTTTGATCACTCGTCTTATTCAAAACATTTGTGCAAACATAGTTAAATTTAAGTCATTTTTGTAGAACTTTTATTAATAAACCAAGCCACGACAAAAGAAGTGATATTTTGTACAAACTTTTAAATAAGACGAATGGTCAAATTTGGTATTAAAAAAGTCAAACGTCTTATAATTTAGGATGGATTGAGTA

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