SE2850504

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9509
  • Sorghum bicolor
  • SE2850504
  • PIF/harbinger
  • To14
  • chromosome_7:30883829-30884077
  • TAA
  • AGGCCTTGTTTACTTCCAAAAAATTTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA            -C        A      -CAAAATATGA   --           GTTTGTATTTGATAAATATTATCCAATTATGGACTAACTAGACTCAAAAGATTCGTCTCGCAAATTAC
  AGGCCTTGTTTA  TTCCAAAA ATTTTG           ACA  GTAGTGTTTTC                                                                    
  ||||||||||||  |||||||| ||||||           |||  |||||||||||                                                                    A
  TCCGGAACAAAT  AGGGTTTT TAAAAC           TGT  GAGGTAGTGTA                                                                    
AA            CA        A      TTTAAAAAAAG   AA           GTTTAGAACGCCGTGTACGTACCTCGTGATTTATACCTATTTTCTTTATTGATTAATGTATCAAATAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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