Plant MITE

SE2850512

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9517
Sorghum bicolor
SE2850512
PIF/harbinger
To1
chromosome_4:64057278-64057526
TTA
AGGCCTTGTTTAGATGCA

Secondary structure and sequence

TSD TIR

5'

3'

TT                  AAAA  --TT      -    A  CTGT   ATTTTCGTTTTTATTTGACAAACATTGTCCAATTATAGAGTAACTAGGCTTAAAAGATTCGTCTTGTGATTTACAAGT
  AGGCCTTGTTTAGATGCA    GT    TTGGAT TTTG CA    AGC                                                                              
  ||||||||||||||||||    ||    |||||| |||| ||    |||                                                                              A
  TCCGGAACAAATCTATGT    AG    TGGGTT TGAA TG    TTC                                                                              
AT                  ---G  TTTT      T    A  ----   TAAGAGGCAGTATAGCTTAGAACGCCGTGTACGTACTTCATAATTTATATCTATTTTTTTTATTGATTAACGTGTCAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850512

TTAGGCCTTGTTTAGATGCAAAAAGTTTTTGGATTTTGACACTGTAGCATTTTCGTTTTTATTTGACAAACATTGTCCAATTATAGAGTAACTAGGCTTAAAAGATTCGTCTTGTGATTTACAAGTAAACTGTGCAATTAGTTATTTTTTTTATCTATATTTAATACTTCATGCATGTGCCGCAAGATTCGATATGACGGAGAATCTTGTAAAGTTTTGGGTTTTTGAGTGTATCTAAACAAGGCCTTA

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