SE2810513

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9518
  • Sorghum bicolor
  • SE2810513
  • Tc1/Mariner
  • St1
  • chromosome_1:3548028-3548268
  • TA
  • TACTCCCTCCGTCCCAAAATAACTGTCGTTCTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
        CC                    C   -------   C     AA  AACTTTGATTAA  -- TA  TTAAAAAATATTAATACTTATGATACATAATTAGTAGCATCGGAAAGATCTCTTAATC
TACTCCCT  GTCCCAAAATAACTGTCGTT TTG       CTT CCGAG  AC            AT  A  TA                                                          
||||||||  |||||||||||||||||||| |||       ||| |||||  ||            ||  |  ||                                                          T
ATGAGGGA  CAGGGTTTTATTGACAGCAA AAC       TAC AGTGT  CA            AA  G  AT                                                          
        TA                    -   CCAAAAG   -     -T  ------------  TT --  CTAAATATCTTTTATGCACGTTGTAAATATAGAGGTTTATTTAAACAATTGTTTTTGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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