SE2820515

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9520
  • Sorghum bicolor
  • SE2820515
  • Mutator
  • M5
  • chromosome_7:5864178-5864737
  • TTTTCTATC
  • GAGAGATTTACTTGTATGGCCCTCAAAAGAATGCCTCTTCCTTGTATGGCCTCTTTTTTTTTAACTTCCTTCTATAGCCCTCAAATGAACTTTCATTCCTTCTATGGCCTTCTGTCCATTTTTAGCACTTAACGGTGTTATGTGGAGGATAAAAGACCATAATGCCCCTGGCGTCAAATTTTTTGCAAAGTTTGGTTTGTTTCTTGTATATTTTGAGTA

Secondary structure and sequence

TSD    TIR
5'



3'
TTTTCTATC               A       C                                      --A            A     C       C                           A                      T       -AT                        C   ---                                --------         -----ATA  AAACAAATAAATTGACAATTTAGACATTATAACACTA
         GAGAGATTTACTTGT TGGCCCT AAAAGAATGCCTCTTCCTTGTATGGCCTCTTTTTTTTT   ACTTCCTTCTAT GCCCT AAATGAA TTTCATTCCTTCTATGGCCTTCTGTCC TTTTTAGCACTTAACGGTGTTA GTGGAGG   AAAAGACCATAATGCCCCTGGCGT AAA   TTTTTTGCAAAGTTTGGTTTGTTTCTTGTATA        TTTTGAGTA        GT                                     
         ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||   |||||||||||| ||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||   |||||||||||||||||||||||| |||   ||||||||||||||||||||||||||||||||        |||||||||        ||                                     C
         CTCTCTAAATGAACA ACCGGGA TTTTTTTACGGAGAAGGAACATACCGGAGAAAAAAAAA   TGAAGGAAGATA TGGGA TTTGCTT AAAGTAAGGAAGATACCGGAAGGTAGG AAAAGTCGTGAATTGCCACAAT CACCTCC   TTTTCTGGTATTATGGGGACCGTA TTT   AAAAAGTGTTTCAAACCAAACAAAGAACATAT        AAAACTCGT        CG                                     
CTATCTTTT               C       A                                      ACC            C     A       A                           C                      T       CAT                        C   TGA                                TTACTTTT         ATATGACA  ACACTACGACAGCTTTATAAATAATACTAGGTTTATA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End