Plant MITE

SE2830518

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9523
Sorghum bicolor
SE2830518
hAT
Hat38
chromosome_10:48785501-48785685
AGGGCAGG
GCAGGCAGGGGCGAAGCTACCGTAAAATTTATGGTGGTGCAC

Secondary structure and sequence

TSD TIR

5'

3'

AGG  AGG               C  AA     AT          AAC     CAAC -- T TAGAAACATGCCTACTTTTAACTGATTTATATGG
   GC   CAGGGGCGAAGCTAC GT  AATTT  GGTGGTGCAC   GTTAA    A  G G                                  
   ||   ||||||||||||||| ||  |||||  ||||||||||   |||||    |  | |                                  T
   CG   GTCCCCGCTTCGGTG CA  TTAAA  CCACCACGTG   CATGG    T  A T                                  
GGA  GGA               -  AC     -C          -CC     ---- CC - TCTTTTTTATAAATCATGATTCATCGAATAAAAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2830518

AGGGCAGGCAGGGGCGAAGCTACCGTAAAATTTATGGTGGTGCACAACGTTAACAACAGTGTAGAAACATGCCTACTTTTAACTGATTTATATGGTCAAAATAAGCTACTTAGTACTAAATATTTTTTCTTACCTGGTACCCGTGCACCACCCAAATTCAACGTGGCTTCGCCCCTGAGGGCAGG

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