SE2850519

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9524
  • Sorghum bicolor
  • SE2850519
  • PIF/harbinger
  • To65
  • chromosome_3:74200364-74200734
  • TAA
  • AGGCCAGTCTCAATGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA            A   A    GTCACTGCACGGTTTCACAGACCAACGCGTCATCAAGATTGAAATGAAACCATCTATGAAATAACCCCAGCAATGAAGCATTTCACTCTGTTGTTTCCAAGGCTAAGCAAAGCATTTAATTACTGTAAAATGATTGGATCACATGCAAGATGGTGAAACGATT
  AGGCCAGTCTCA TGG CAGT                                                                                                                                                                   
  |||||||||||| ||| ||||                                                                                                                                                                    
  TCCGGTCAGAGT ACC CCCA                                                                                                                                                                   
AA            G   -    AAGTGGTCCTACAGTACGTGTAAATAATCTCGCAGTACAGTCGTTTTGACGTGAAAAACGTACCTTGCTTCTCCTCTCTCTTCCTTCATCAAAGTGGTACCACTTTGGGGTGCCCGCAACAAAGGGTGCGCCACTTTGCTCTACTTTAGGGGTGACTCCCGAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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