Plant MITE

SE2810521

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9526
Sorghum bicolor
SE2810521
Tc1/Mariner
St8
chromosome_3:5340907-5341056
TA
TACTCCCTCCATTCCAAACTATAAGACGTTTTGGCTTTTCTACATACATAGCTTTTGCTATGCAATTAGATATACACTATGTCTAGATACATAGTAAAGGAAATGTACCTAGAAAAGCCAAATGTCTTATAATTTGGAATGGAGGGAGTA

Secondary structure and sequence

TSD TIR

5'

3'

                  C            T          CA     AG           CAA         C
TACTCCCTCCATTCCAAA TATAAGACGTTT GGCTTTTCTA  TACAT  CTTTTGCTATG   TTAGATATA 
|||||||||||||||||| |||||||||||| ||||||||||  |||||  |||||||||||   ||||||||| A
ATGAGGGAGGTAAGGTTT ATATTCTGTAAA CCGAAAAGAT  ATGTA  GGAAATGATAC   GATCTGTAT 
                  A            -          CC     AA           ATA         C

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

SE2810521

Basic info.

Secondary structure and sequence

MITE cluster

Closed gene

>SE2810521