SE2850523

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9528
  • Sorghum bicolor
  • SE2850523
  • PIF/harbinger
  • To14
  • chromosome_2:8739450-8739698
  • TAA
  • AGGCCTTGTTTAGTTCCAAAATTTTTTTATAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               C      TT    A     TAAACACTGTA    TT   TTTGTATTTGATAAATATTTTCTAATCATGGATTAACTAGGCTCAAAAAATTTGTCTCACAAATTACAAGCAA
  AGGCCTTGTTTAGTT CAAAAT  TTTT TAAAA           GCAC  TCA                                                                         
  ||||||||||||||| ||||||  |||| |||||           ||||  |||                                                                         A
  TCCGGAACAAATCAA GTTTTA  AAAA GTTTT           GTTC  TAA                                                                         
AA               A      -T    C     -------TTTA    --   GAGGCAGTGTAGCTTAGAACACCGTGTACGTACCTCGTAATTTATATCTATTTTTATTAATAATTAATGTATC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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