SE2830525

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9530
  • Sorghum bicolor
  • SE2830525
  • hAT
  • Hat8
  • chromosome_3:42318806-42318977
  • ATCCTCCA
  • CAGTGGCGAAGCTAGA

Secondary structure and sequence

TSD    TIR
5'



3' 
ATCCTCCA              G -GGAATTTAGA     ---      TT   T   -- GATATAAAAATATAAGCAACAACTATGGT
        CAGTGGCGAAGCTA A           GGGTG   GTGCGC  CTT TGT  T                             
        |||||||||||||| |           |||||   ||||||  ||| |||  |                             A
        GTCACCGCTTCGAT T           CCCAC   TACGTG  GTT GTT  T                             
ACCTCCTA              G AACATCGAACA     GTT      --   -   TT AAATTGTTTACTGATGATTTTAGTTAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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