SE2850528

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9533
  • Sorghum bicolor
  • SE2850528
  • PIF/harbinger
  • To1
  • chromosome_3:51995651-51995888
  • TAA
  • AGGCCTTGTTTAGTTCCCAAAAATTTTT

Secondary structure and sequence

TSD    TIR
5'



3'
TA               CC A         AAGATTTCC    -----    -----------CG   -----      ACACATGCATGAAGCATTAAATGTAGATGAAAATAAAAACTAATTGCACAG
  AGGCCTTGTTTAGTT  C AAAATTTTT         CGTC     ACAT             AAT     CTTTAT                                                   
  |||||||||||||||  | |||||||||         ||||     ||||             |||     ||||||                                                   T
  TCCGGAACAAGTCAA  G TTTTAAAAA         TGAT     CGTG             ACT     TAATAG                                                   
AA               AC C         --CCAAAAC    GACAT    AAAGCAAACAAAC   GTTAA      GTTAATACCTCATTGATCCGAGTTTTTTAAGCAGAGCGTTTAATGTCTGTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End