SE2850529

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9534
  • Sorghum bicolor
  • SE2850529
  • PIF/harbinger
  • To4
  • chromosome_9:44088482-44088718
  • TAA
  • AGGCCTTGTTTAGTTGGCAAAATTTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               G      T     GTT       -  - G    --- T      TTTATTTGACAAACATTGTCCAATCATGGAGTAGCTAAGCTCAAAAGATTCATCTCACAAAT
  AGGCCTTGTTTAGTT GCAAAA TTTTT   TTTGGCT AC T TAGC   A TTTGTT                                                              
  ||||||||||||||| |||||| |||||   ||||||| || | ||||   | ||||||                                                              T
  TCCGGAACAAATCAA CGTTTT AAAAG   TTCTAAG GG A GTGT   T TAGAAA                                                              
AA               G      T     ---       A  C -    AGC -      CCAGCGTACGTACCTCGTAATTTATATCTGCTTTTATTTTTGATTGACGTGTCAAATGGACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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