SE2830539

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9544
  • Sorghum bicolor
  • SE2830539
  • hAT
  • Hat41
  • chromosome_5:18614927-18615100
  • ATTTGGTT
  • TCAGGGGCGAGGCTATCATCAATGTTATGGTGGTGCAC

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTTGGT                CAT AA      G         C     AGCAACAA TGAATTTTTCTCATATTACATGGTGAGTATTA
       TCAGGGGCGAGGCTAT   C  TGTTAT GTGGTGCAC ACTCA        A                                
       ||||||||||||||||   |  |||||| ||||||||| |||||        |                                G
       AGTCCCCGCTTCGGTG   G  ACAATG CACCACGTG ACCGT        G                                
TTGGTTT                --C AC      G         -     -------- GTCCCACGTGGTTTTTAAACAATCATTTAAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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