Plant MITE

SE2850540

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9545
Sorghum bicolor
SE2850540
PIF/harbinger
To22
chromosome_10:55879222-55879470
TTA
AGAGCAAGTATTATGGTG

Secondary structure and sequence

TSD TIR

5'

3'

TT         ATT      -------------         CTGGCTAAATGCTGATGTGGAGAAGAGAAGGGAGGAGAGAGAGGAGAAGCAGGCTGTAAGCTTACAGCCAGGTTAGACACAAAAACCAA
  AGAGCAAGT   ATGGTG             GGCTGTAAG                                                                                         
  |||||||||   ||||||             |||||||||                                                                                          
  TCTCGTTCA   TATTAT             CCGACATTC                                                                                         
AT         AAT      GTCAGGTGAACGA         CATTGAATGTCGGAAGAACGTCGAGTGGGTATGTTATCAATCGATAAGTGATAATTATGTACCGGGTGAATAGAGAGAGTGTTTCAAAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850540

TTAGAGCAAGTATTATGGTGGGCTGTAAGCTGGCTAAATGCTGATGTGGAGAAGAGAAGGGAGGAGAGAGAGGAGAAGCAGGCTGTAAGCTTACAGCCAGGTTAGACACAAAAACCAAGAAACTTTGTGAGAGAGATAAGTGGGCCATGTATTAATAGTGAATAGCTAACTATTGTATGGGTGAGCTGCAAGAAGGCTGTAAGTTACCTTACAGCCAGCAAGTGGACTGTATTATTAAACTTGCTCTTA

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