Plant MITE

SE2830544

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9549
Sorghum bicolor
SE2830544
hAT
Hat42
chromosome_3:52509482-52509789
CTTTCAAG
CTTTCAAGCAGGCACGAAGC

Secondary structure and sequence

TSD TIR

5'

3'

   TC       C       ------------     -    GGCTA   --------    TCCAGCCCCCCCTACCGCTGCTGGCCTAGTGAAATTTCTAGTGTTTTTCTTCTAATTTTAGACATAAATTTATAAAGTAGGGTGGGCTGAGAACTTTATTTTTTA
CTT  AAGCAGG ACGAAGC            CAGCG GTGG     GGG        GGGC                                                                                                         
|||  ||||||| |||||||            ||||| ||||     |||        ||||                                                                                                          
GAA  TTCGTCC TGCTTCG            ATCCC CCCG     ACT        AGAT                                                                                                         
   CT       C       ATCTTTTTTTAA     C    -----   TGTTTTTA    GTAGCTGAATCGAGATGATAATAGGGAGCATTATTTTTTTATATAATCAAATTTCATCAGAATCTAATTTTTATATCTGGTTATTACTTTAAGTGTTTTATATAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2830544

CTTTCAAGCAGGCACGAAGCCAGCGGTGGGGCTAGGGGGGCTCCAGCCCCCCCTACCGCTGCTGGCCTAGTGAAATTTCTAGTGTTTTTCTTCTAATTTTAGACATAAATTTATAAAGTAGGGTGGGCTGAGAACTTTATTTTTTAGATATATTTTGTGAATTTCATTATTGGTCTATATTTTTAATCTAAGACTACTTTAAACTAATATATTTTTTTATTACGAGGGATAATAGTAGAGCTAAGTCGATGTAGAATTTTTGTTCAGCCCCCCCTAAATTTTTTTCTAGCTTCGTCCCTGCTTTCAAG

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