SE2850550

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9555
  • Sorghum bicolor
  • SE2850550
  • PIF/harbinger
  • To2
  • super_283:1306-1554
  • TGG
  • GGGCCTTGTTTAGTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TG                ACCCCGAAATCC          CAA    CT    C  ATCAAATCT  C     ----------------    ATGAAGCATTAAATATAGTCAAAAATAAAAACTAATTACACAGTTTGTCTG
  GGGCCTTGTTTAGTTC            AAAAAGTTTT   GATT  TCGT AC         TG GGCAC                ATGC                                                   
  ||||||||||||||||            ||||||||||   ||||  |||| ||         || |||||                ||||                                                    
  TCCGGAACAAATCAAG            TTTTTTAAAG   CTAA  AGCG TG         AC TCGTG                GTTT                                                   
GG                ----------AC          --C    --    A  ---------  A     AAAGCAAAAATAAACT    ATAACAGGTTAGTATTTGATTGATCCTAGTTTTCTAAGCAGAGCGCTAAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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