SE2850552

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9557
  • Sorghum bicolor
  • SE2850552
  • PIF/harbinger
  • To1
  • chromosome_5:20341896-20342144
  • TAA
  • AGGCCTTGTTTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA            GTTCACCTCAAAATCAAAAAACTTTTC     TTC   TCACATCGAATCTTTCGGCACATGCATAAAGCACTAAATATAGACGAAAATAAAAACTAATTGCACAGTTTACCTGTAAATCGCAAG
  AGGCCTTGTTTA                           AAGAT   TCG                                                                                       
  ||||||||||||                           |||||   |||                                                                                        
  TCCGGAACAAAT                           AAGGC   TTT                                                                                       
AA            --------------------------A     ---   TGAAAAACCAAAAGTCTTGACATCGTGAAAGCAAAAATAAACTGTTTGTAATAAGTTGATACCTCATTGATCCAAATTTTCTAAGTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3