SE2810553

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9558
  • Sorghum bicolor
  • SE2810553
  • Tc1/Mariner
  • St6
  • chromosome_7:61876994-61877254
  • TA
  • TACTCCCTCTGTCCCTGAAAGCTGCAACTTTTAGAGTTGTCCTAAGTCAAACTT

Secondary structure and sequence

TSD    TIR
5'



3'
                       G              -  -  TA   C      TTAA        C   A           A  C  TA       TA ------  CCAAAATAATACCATTAGATTTATCATC
TACTCCCTCTGTCCCTGAAAGCT CAACTTTTAGAGTT GT CC  AGT AAACTT    AACTTTGA CAA TTTATAGAAAA GA GC  AGATTTA  G      TA                            
||||||||||||||||||||||| |||||||||||||| || ||  ||| ||||||    |||||||| ||| ||||||||||| || ||  |||||||  |      ||                            G
ATGAGGGAGACAGGGACTTTCGA GTTGAGGATCTTAG CA GG  TCA TTTGAA    TTGAAACT GTT AAATATCTTTT CT CG  TAGTTAT  A      GT                            
                       A              G  C  --   A      CAAA        A   G           -  -  --       -- GATACT  ATTTTACTCATAGAATACTTTTATATAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End