SE2850555

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9560
  • Sorghum bicolor
  • SE2850555
  • PIF/harbinger
  • To68
  • chromosome_10:244498-245107
  • TAA
  • AGAGCATCTCCAAGGGACTTTGCAAATAATTTTTGCATTTGATGTTGTTTGCAAA

Secondary structure and sequence

TSD    TIR
5'



3'
TA                A            TTT       T A G           TTACCAAACTCA    -- A   ----      AAT    ----- AACTCCAAAGGACTTTGCATTTAGACTTGGCAAACCCAAAGTATAGATCCCACCCCTGAATTTTTTTTCACCGATCGCGCCTGCGCGTTTTTTTTCCTTCGCGCCATTTTGACGTACGTCGTGCGTGCCAGTCGCCGCCCAGGCCAGGTCGCCGCCGGTTGCCGCCCAGCCCAGGTCTTCGCGCCAGTCGCCGCCCAACCCAGGCCACGTTCGTCGT
  AGAGCATCTCCAAGGG CTTTGCAAATAA   TTGCATT G T TTGTTTGCAAA            TTTG  C AAG    TCTAAA   AGTC     C                                                                                                                                                                                                                         
  |||||||||||||||| ||||||||||||   ||||||| | | |||||||||||            ||||  | |||    ||||||   ||||     |                                                                                                                                                                                                                          
  TCTCGTAGAGGTTCCC GAAACGTTTGTT   AACGTAA C G GATAAACGTTT            TTTC  A TCT    TGGGGA   GGTT     A                                                                                                                                                                                                                         
AA                -            TGT       - - G           ------------    TC -   TTTA      ---    ACCAA ACGTTTATTCCAAACGTTAAACCAATTGAAACGTTTATCTCCAAGTCCGAAACGTATATACGTTTGGAAGGGTGGTGAAACGTAGATGTTAAAGCTGGAAGGTGCAGCCTGAGGCAGGGAGGCCGAGAGGGTGGGGCGCGCTAAAGAGATGCGGGCAGGCGGGAGGGACGGCGCGCGCGGGCGGGACTGCCTCCACCTGCCTCGGCTTGACTGCGCT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End