SE2850557

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9562
  • Sorghum bicolor
  • SE2850557
  • PIF/harbinger
  • To14
  • chromosome_9:45623353-45623601
  • TTA
  • AGGCCTTGTTTAGTTCCTAAAATATTTTGTAAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT            G    T     A           TTTTCATATTCCCC    -  TCGAATCTTGTGGTACATACATAGAGCATTAAATATAGATAAAAGAAATAACTAATTACACAGTTTATCTGT
  AGGCCTTGTTTA TTCC AAAAT TTTTGTAAAAT              ATCA CA                                                                        
  |||||||||||| |||| ||||| |||||||||||              |||| ||                                                                        A
  TCCGGAACAAAT AAGG TTTTA AAAACGTTTTA              TATC TC                                                                        
AT            A    -     G           ----------TCCT    A  GTGAAAGCAAACATAAACTATTTATTAAAGGTAAGTATCTGATTGATCCGAGTTTTCTAAGCAGAGCGTTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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