SE2810563

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9568
  • Sorghum bicolor
  • SE2810563
  • Tc1/Mariner
  • St3
  • chromosome_1:2928664-2929328
  • TA
  • TACTCCCTCCATACTGAAAAAATGGACGTTTAGG

Secondary structure and sequence

TSD    TIR
5'



3' 
                      T       -    ATAA   --    -  AACCAAGAAGTCATTAATTAGGGGGTATTTTTCCTCCTTTACCCCTATTAAATAAGCTGCGGGGTGCATGTTATCTAGGAAAGATTTGTAGTTCTACTGGCTAGCAAGCGCGAGTTGGGTGGATGGCTGTTAGGGGGTTGGTTCGATCCCTGGTGGCCGCGCTATTTTTTGGCACTGAGTAGATTTTCACTTTTTTTTCATGTTTTTTCATGGTACTGTGCGTGTGCGGGCAGGGATGGCACGCGCTTATTTCGTTGATTTGGACGTGTCCGTGCTTGTAGCCG
TACTCCCTCCATACTGAAAAAA GGACGTT TAGG    GAT  TGTG AT                                                                                                                                                                                                                                                                                            
|||||||||||||||||||||| ||||||| ||||    |||  |||| ||                                                                                                                                                                                                                                                                                            C
ATGAGGGAGGTATGACTTTTTT TCTGCAG ATCC    CCT  GGGC AA                                                                                                                                                                                                                                                                                            
                      C       G    --CA   TT    C  AGCGTTTTTGTCTGCAGGATTCGTCGCCTCTCATAACACCTGCGCAAACGGGGACGCTTGGCGGGCAAGCGCACGCAGGGAAGCGCACGCCGGAGCAAGCAGCGGGCGTAACTTCCGAGCGTCCCCGGAGCAAGCAGCGGGCGTAACTTCCGAGCGCACGCAGGCAAGCGCGTCAAGTCCATTTGCTTTTTTTCGCGGTTGTTTTCGCGCAACTTTCAGTTTCCTTTTTTTTCCTTTTTTTTTCGCCGTTTGTTACACGAGTTGCGCCGCTTGTCCGAGGTTTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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