Plant MITE

SE2850567

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9572
Sorghum bicolor
SE2850567
PIF/harbinger
To71
chromosome_5:49877009-49877336
TTA
AGGGCAATCCCAATGCAGAAACCAGCAT

Secondary structure and sequence

TSD TIR

5'

3'

TT      A         -      CA    --   TTCTATAGACATTAATTATGGTGCCACCTAAGCATTTTGCTGATGTGGCAAGGTATTTATTGAAGAGAGAGAGCAAAAATCATAGAAACTGGGTCTAACTTAGAAACCATGTCTACGCGAAATCCAAGAC
  AGGGCA TCCCAATGC AGAAAC  GCAT  AGT                                                                                                                                  
  |||||| ||||||||| ||||||  ||||  |||                                                                                                                                   
  TCCCGT AGGGTTACG TCTTTG  TGTA  TCA                                                                                                                                  
AT      G         A      -A    CA   AAAATATGAATAATTAAAGATATCTGTGATACATATCTTTGATACCAGGGTTACCTATGAAAGATATGTTATTAAACAATAGGTTAGTGTAAGTAAGAGAGAGGTAAGAGTTGGTTAGCATAGTGAAGTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850567

TTAGGGCAATCCCAATGCAGAAACCAGCATAGTTTCTATAGACATTAATTATGGTGCCACCTAAGCATTTTGCTGATGTGGCAAGGTATTTATTGAAGAGAGAGAGCAAAAATCATAGAAACTGGGTCTAACTTAGAAACCATGTCTACGCGAAATCCAAGACATGAAGTGATACGATTGGTTGAGAATGGAGAGAGAATGAATGTGATTGGATAACAAATTATTGTATAGAAAGTATCCATTGGGACCATAGTTTCTATACATAGTGTCTATAGAAATTAATAAGTATAAAAACTACATGTAGTTTCTAGCATTGGGAGTGCCCTTA

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