SE2850568

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9573
  • Sorghum bicolor
  • SE2850568
  • PIF/harbinger
  • To1
  • chromosome_5:53070359-53070599
  • TTA
  • AGGCCTTGTTTAGTAAATCCAAAAAGTTTTCAAGATT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT              AAA   -          CAA    CCCCGTCACA   AATT   C     --------------    ATGAAGCATTAAATATAGACGAAAACAAAAACTAATTACACAGTTTGTCTGT
  AGGCCTTGTTTAGT   TCC AAAAAGTTTT   GATT          TCG    TTG GGCAC              ATGC                                                    
  ||||||||||||||   ||| ||||||||||   ||||          |||    ||| |||||              ||||                                                     
  TCCGGAACAAATCA   AGG TTTTTTAAAG   CTAA          AGC    GAC TCGTG              CTGT                                                    
AT              ---   C          --C    ----------   -GAT   A     AAAGCAAAAATAAA    TTATAACAGGTTAGTACTTGATTGATCCTAGTTTTCTAAGCAGAGCACTAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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