SE2850569

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9574
  • Sorghum bicolor
  • SE2850569
  • PIF/harbinger
  • To4
  • chromosome_1:71472841-71473090
  • TAA
  • AGGCCTTGTTTAGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               -----     TTTTTTTGGCAAAATAAACATTGTAGCATTTTCGTTTGTATTTGACAAATATTATCTAATCATGGACTAATTAGACTCAAAAGATTCGTCTCGCAAATTA
  AGGCCTTGTTTAGTT     CCAAA                                                                                                    
  |||||||||||||||     |||||                                                                                                    C
  TCCGGAACAAATCAA     TTTTT                                                                                                    
AA               AGCTT     AAATGTTTTTAAAAGTCTAAGAGGCAGGGTAGCTTAGCACGCCGTGTACGTACTTTGTAATTTATATTTATTTTTGTTATTAATTAATATATTAAACAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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