Plant MITE

SE2810571

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9576
Sorghum bicolor
SE2810571
Tc1/Mariner
St6
chromosome_9:48368646-48368896
TA
TACTCCCTCTGTCCCTGGAAGCTTCAATTCCTAGA

Secondary structure and sequence

TSD TIR

5'

3'

                             C     ATCCGTGCCA      T   --------- CCA    ATAAAAAAGAGTATCAATATCTATGACATAAAATGAGTATCTTATGAAAATATATTCTATGAT
TACTCCCTCTGTCCCTGGAAGCTTCAATT CTAGA          GTTAAG TTG         A   ACTT                                                               
||||||||||||||||||||||||||||| |||||          |||||| |||         |   ||||                                                                
ATGAGGGAGACAGGGACTTTCGAAGTTAA GATCT          AGAATT CAG         T   TTGA                                                               
                             A     ------CAAC      -   TTTGAAAAA ---    AATTGGTTTAAAGATCCTTTTTCTGTGATTCTAAATATCATGGTTTAATCATGATAATCTAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810571

TACTCCCTCTGTCCCTGGAAGCTTCAATTCCTAGAATCCGTGCCAGTTAAGTTTGACCAACTTATAAAAAAGAGTATCAATATCTATGACATAAAATGAGTATCTTATGAAAATATATTCTATGATAAATCTAATAGTACTAATTTGGTACTATAAATCTTAGTGTCTTTTTCCTAGAAATTTGGTTAAAGTTTAAAAAGTTTGACTTAAGACAACTCTAGAAATTGAAGCTTTCAGGGACAGAGGGAGTA

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