SE2850573

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9578
  • Sorghum bicolor
  • SE2850573
  • PIF/harbinger
  • To16
  • chromosome_10:4976188-4976608
  • TTA
  • AGGACATTCACAATGCAAGACTCTATCACAGAGTCCAAA

Secondary structure and sequence

TSD    TIR
5'



3'
TT   A             A          C      C   ACA  T   TA    TTATTTATGGTATTCTGCTGATGTGGCAGCATATTTATTGAAGAAAGAGGTAGAAAAAATAAGACTCCAAGTCTTATTTAGACTCTAAGTCTACATTGTTCGAGGTAATAAATAACTTTAGACTCTACGATAGAGTCTGCATTGTGAGTGCCCTTAG
  AGG CATTCACAATGCA GACTCTATCA AGAGTC AAA   AG AAT  CATA                                                                                                                                                             
  ||| ||||||||||||| |||||||||| |||||| |||   || |||  ||||                                                                                                                                                              
  TCC GTGAGTGTTACGT CTGAGATAGT TCTCAG TTT   AT AAA  TAAT                                                                                                                                                             
AT   C             -          A      A   -CA  -   --    GGAGCTTGTTACACCTGAACCTCAGATTTATTCTGAACCTCAGAATAAAAAAGATGGAGAAAGAAGTTATTTATACGACGGTGTAGTCGTTTTATAGTATTTATTATACATTAATTCACAGAACCTGAGACACTATCTCAGAACGTGACACTCACGG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End