SE2850574

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9579
  • Sorghum bicolor
  • SE2850574
  • PIF/harbinger
  • To7
  • chromosome_3:13185129-13185340
  • TTA
  • AGGCCAGTCTCAATGCATAGTTTCATGGCACA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                  A        ----------     -----------      AAAACTATAAACTAGGTAACCGAGCCACAAGAGTTTCATGGGGATGAAACTCCTCT
  AGGCCAGTCTCAATGCAT GTTTCATG          GCACA           GTTACC                                                        
  |||||||||||||||||| ||||||||          |||||           ||||||                                                         
  TCCGGTCAGAGTTACGTA CAAAGTAC          CGTGT           CGGTGT                                                        
AT                  -        TTTCACAGTA     AATTTATCCCA      ATTCGTTTTAACGACTGAACCGTCCCAGTAATTTATTTCCTCAAAGTAGTCTACTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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