SE2850575

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9580
  • Sorghum bicolor
  • SE2850575
  • PIF/harbinger
  • To1
  • chromosome_8:49915607-49915855
  • TAA
  • AGGCCTTGTTTAGATGCAAAAACTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                  ----       -----TTG       GACAC G AGCATTTTCGTTTTTATTTGACAAACATTGTTTAATTATGGAGTAACTAGGCTTAAAAGATTCGTCTCGTGATTTACA
  AGGCCTTGTTTAGATGCA    AAAACTT        GGATTTT     T T                                                                              
  ||||||||||||||||||    |||||||        |||||||     | |                                                                               
  TCCGGAACAAATCTATGT    TTTTGGG        TGTTCTA     A G                                                                              
AA                  GGGT       TTTTGAAA       ----- - GAGCAGTGTAGCTTAGAACGCCGTGTACGTACTTCATAATTTATATCTATTTTTCTTATTGATTAACGTGTCAAATGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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