SE2850577

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9582
  • Sorghum bicolor
  • SE2850577
  • PIF/harbinger
  • To1
  • chromosome_9:53417328-53417576
  • TAG
  • GGGCCTTGTTTAGTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                ACCCCAAAATCCAAAAA   TT  AGATTCTCCGTCACATCGAATCTTGCGGCACATGCATGAAGCATTAAATATAGATGAAAATAAAAACTAATTACACAGTTTGTCTGTAAATC
  GGGCCTTGTTTAGTTC                 GTT  CA                                                                                            
  ||||||||||||||||                 |||  ||                                                                                             
  TCCGGAACAAATCAAG                 GCT  TT                                                                                            
GA                -----------------   --  TTTAAAGCCTAAAGCGATGACATCGTAAAAGCAAAAATAAACTATTTATAATAGATTAGTACTTGATTGATTATAGTTTTCTAAGCAGAGCG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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