SE2820578

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9583
  • Sorghum bicolor
  • SE2820578
  • Mutator
  • M1
  • chromosome_3:41188093-41188402
  • TTTCAAATT
  • GGAAAAAGTCTACATCACTCCCTGAACTATGGGGTGGTGTCTACTTTACCCCCCGAACTATTAAACAGTTTAATTTAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTCAAATTT                     C                          CC C         T   CA           GATTTACTA    ---    CAAAGA --  AGCAAAAATAAATAGAAAAAAGAAAAAGTCAAAACCACTATTACTG
          GGAAAAAGTCTACATCACTCC TGAACTATGGGGTGGTGTCTACTTTA  C CCGAACTAT AAA  GTTTAATTTAT         TGAT   TTTT      T  TC                                              
          ||||||||||||||||||||| ||||||||||||||||||||||||||  | ||||||||| |||  |||||||||||         ||||   ||||      |  ||                                               
          CCTTTTTCAGATGTAGTGGGG ATTTGATATCCCACCACAGATGAAAT  G GGCTTGATA TTT  CAGATTAAATA         GGGG   TGAT      A  TT                                              
TTTAAACTTT                     A                          CT A         C   AC           ---------    ACT    ------ GA  TTGGCAAGTTTAGCGGGGGATTCGCCAAAAACTCCGCCAAAAGGAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3