SE2850579

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9584
  • Sorghum bicolor
  • SE2850579
  • PIF/harbinger
  • To7
  • chromosome_2:45078988-45079199
  • TAA
  • AGGCCAGTCTCAATGCATAGTTTCATGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                  A         -CACA      A  ACTATAAACTAGGTAACCGAGCCACAAGAGTTTCATGGGGATGAAACTCCTCTCTCATATGAT
  AGGCCAGTCTCAATGCAT GTTTCATGA     GTTACC AG                                                               
  |||||||||||||||||| |||||||||     |||||| ||                                                               G
  TCCGGTCAGAGTTACGTA CAAAGTACT     AGTACG TG                                                               
AA                  -         CTCAC      -  TAATTTATCCAACAGTGTATTCGTTTTAACGACTGAACCGTCCCAGTAATTTACTTCCTCAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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