SE2850580

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9585
  • Sorghum bicolor
  • SE2850580
  • PIF/harbinger
  • To3
  • chromosome_1:48334175-48334423
  • TTA
  • AGGCCTTGTTTAGTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                -----ACCCCAAAAACCAAAAACCTTT     -----------   TCTGTCACATCGAATCTTGCAGCATATGTATAGAGTATTAAATATATACAAAAACAAAAACTAATTGC
  AGGCCTTGTTTAGTTC                           CAAGA           TTC                                                                    
  ||||||||||||||||                           |||||           |||                                                                    A
  TCCGGAACAAATCAAG                           TCGTA           AAA                                                                    
AT                ACTTAAAAAAAACCTAAAACCAAGACA     AAAGCAAAAAT   CTGTTTGTAACAGGTTAGTACCTGATTGATCCGAGTTTTCTAAGTAGAGCACTAAATGTTCGTTTGAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3