Plant MITE

SE2850581

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9586
Sorghum bicolor
SE2850581
PIF/harbinger
To9
chromosome_9:49406504-49407158
TTA
AGAGCATCCCCAACCGTTTTGCATAATTGGT

Secondary structure and sequence

TSD TIR

5'

3'

TT    C   CC           CA   T    -      AATGAGGGAGTTTGCCAAGTCTTAAAAAAATATGGCAAAGGTAAAAAGAGGCAATCTCCAACGGTTTGGCATTAATCACTTGGCAAAAAAGAAAATTATAGACCCACACAATTTTTTTGCCGAGCTTTTCTCCTCCCCACGCGTCGTGTGAATGTTCGCGGCAAATTTATTCCTGCCGAGGCGCTGAGGTTGCGGCGTTTGTGCATGGCCGCTCGGAGTTTGGCGGCTGGAGTCTTTGTCGGCAAAAACAATCCGAAGGGCATCGATGGAGTACCTAGCGTTGATGGAA
  AGAG ATC  CAACCGTTTTG  TAA TGGT TTGGCA                                                                                                                                                                                                                                                                                                 
  |||| |||  |||||||||||  ||| |||| ||||||                                                                                                                                                                                                                                                                                                 G
  TCTC TAG  GTTGGCAAAAC  ATT ATCG AAACGT                                                                                                                                                                                                                                                                                                 
AT    A   -A           --   T    G      AAGTATATAAACGTTTTTTCAGAATTTTTGTGGATAGGTTGCCAAACCGTAAACCTGAAACGTTAAAACAATTGAACCGTTTTTATCCCCTTCTTAACCGTATATACGGTTCGGACAAGTGTGAACCGTAACCCTTTGACCGTACTTCAGGCGCGCGCCGACGCTCAACTCCAGCGCGCTTAAACCGCTGTAGGGCGGCGATGAAAGGATGCTTGACGGGTAGCCAGAAGGTAGTTGCGGTCTATGAGGTAGCTACGGGAGGGTTAACAAACACAAAAACGGATAGCCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850581

TTAGAGCATCCCCAACCGTTTTGCATAATTGGTTTGGCAAATGAGGGAGTTTGCCAAGTCTTAAAAAAATATGGCAAAGGTAAAAAGAGGCAATCTCCAACGGTTTGGCATTAATCACTTGGCAAAAAAGAAAATTATAGACCCACACAATTTTTTTGCCGAGCTTTTCTCCTCCCCACGCGTCGTGTGAATGTTCGCGGCAAATTTATTCCTGCCGAGGCGCTGAGGTTGCGGCGTTTGTGCATGGCCGCTCGGAGTTTGGCGGCTGGAGTCTTTGTCGGCAAAAACAATCCGAAGGGCATCGATGGAGTACCTAGCGTTGATGGAAGACCGATAGGCAAAAACACAAACAATTGGGAGGGCATCGATGGAGTATCTGGCGTTGATGGAAGACCGATGGGCAGTTCGTAGGAAAGTAGCGGCGGGATGTCGCCAAATTCGCGCGACCTCAACTCGCAGCCGCGCGCGGACTTCATGCCAGTTTCCCAATGCCAAGTGTGAACAGGCTTGGCATATATGCCAATTCTTCCCCTATTTTTGCCAAGTTAACAAAATTGCAAAGTCCAAATGCCAAACCGTTGGATAGGTGTTTTTAAGACTTTTTTGCAAATATATGAATGCAAAGGCTATTTACAAAACGGTTGAGATACTCTTA

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