SE2850583

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9588
  • Sorghum bicolor
  • SE2850583
  • PIF/harbinger
  • To2
  • chromosome_1:67929350-67929598
  • TAA
  • AGGCCTTGTTTAGTTCTCCAAAAATTTTGCAAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA              TC       A     -      TTTTC    -  -C   -------   CA  GAATCTTTAGACGTATGCATGAAGTATTAAATATAGATAAAAATAAAAACTAATTGCACAGTTTG
  AGGCCTTGTTTAGT  TCCAAAA TTTTG CAAAAT     AGAT TC  CCG       TCA  TC                                                                 
  ||||||||||||||  ||||||| ||||| ||||||     |||| ||  |||       |||  ||                                                                  
  TCCGGAACAAATCA  AGGTTTT AAAAC GTTTTA     CTCG GA  TCG       AAA  CA                                                                 
AA              --       A     C      -----    T  CA   TTAAAGC   --  TAAACTGTTTATAACAGGTTAGTACCTGATTGATCCGAGTTTTCTAAGCAGAGCAGTTAAGGCTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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