Plant MITE

SE2830584

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9589
Sorghum bicolor
SE2830584
hAT
Hat45
chromosome_10:56064764-56065325
CCATGACC
CATGACCCAGGGCCGT

Secondary structure and sequence

TSD TIR

5'

3'

  C    ACC         -   GGCAAAAAATAAGGCCCTGTTCTAACCTCTAAAATAGATCTAGAAAAAAATAGAACAATAATCATATGCAGTATTATGTAACACTAATTTATCGCCCTGAGTAATTAAGAATATTTTCTACGCAAGCCGTGAATTATAAACATGTCTTAAGAGAATTAGGGTACTCGTTGGTTTCTAGCCTCGAAGTACCAAATATCTCAACTTTTTATGGATCCATGACACAATAATATATAATTTGGCACTTGCCAACACACCTTCTT
   CATG   CAGGGCCGT GCC                                                                                                                                                                                                                                                                    
   ||||   ||||||||| |||                                                                                                                                                                                                                                                                    C
   GTAC   GTCCCGGCA GTG                                                                                                                                                                                                                                                                    
CCA    --C         A   TTCCCGCACGTCCGACAAGCTGCCATGTCCCGGAATTTAAAAATCCCCGGAGTTTTAATCTCGAATAATTATTAATTATAAATTATAAAACACGATTGAAAAAACACATCTCAAGTACTATTTACGAACACAGTCGATATTTTAACGATATAATAAAGAAGAATAAACCGTGGTATAACAAAGTAGATTCAGCAAACAGGCAGTCAGACTGATAGGACTAGGTTGAACGACTGAGTGCAGAAGCAACTGTTACCTGTGAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2830584

CCATGACCCAGGGCCGTGCCGGCAAAAAATAAGGCCCTGTTCTAACCTCTAAAATAGATCTAGAAAAAAATAGAACAATAATCATATGCAGTATTATGTAACACTAATTTATCGCCCTGAGTAATTAAGAATATTTTCTACGCAAGCCGTGAATTATAAACATGTCTTAAGAGAATTAGGGTACTCGTTGGTTTCTAGCCTCGAAGTACCAAATATCTCAACTTTTTATGGATCCATGACACAATAATATATAATTTGGCACTTGCCAACACACCTTCTTCTAGTGTCCATTGTCAACGAAGACGTGAGTCAGCAAGTTGGATCAGGATAGTCAGACTGACGGACAAACGACTTAGATGAAACAATATGGTGCCAAATAAGAAGAAATAATATAGCAATTTTATAGCTGACACAAGCATTTATCATGAACTCTACACAAAAAAGTTAGCACAAAATATTAAATATTAATTATTAATAAGCTCTAATTTTGAGGCCCCTAAAAATTTAAGGCCCTGTACCGTCGAACAGCCTGCACGCCCTTGTGAACGGCCCTGCCATGACC

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