Plant MITE

SE2810587

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9592
Sorghum bicolor
SE2810587
Tc1/Mariner
St4
chromosome_5:5375781-5376024
TA
TACTCCCTCCGTCTCAAA

Secondary structure and sequence

TSD TIR

5'

3'

                  AAAA      T    GTTG     CA   --   T           C         A   T       A     ATCC    -TTTT    TGACTTATTT        GA  TA
TACTCCCTCCGTCTCAAA    AGACCG TGTT    ACTTT  GAC  ATC TGTTTGACCAT CGTCTTATT AAA TTTTTGT TAAAT    TCTA     GATA          GATCATTA  GG  
||||||||||||||||||    |||||| ||||    |||||  |||  ||| ||||||||||| ||||||||| ||| ||||||| |||||    ||||     ||||          ||||||||  ||   
ATGAGGGAGGCAGAGTTT    TCTGGC ACAA    TGAAA  CTG  TAG ACAAACTGGTG GCAGAATAA TTT AAAAACA ATTTA    AGAT     CTAT          TTAGTAAT  TT  
                  ---G      T    AAAA     --   GT   T           A         G   T       C     ----    TTTAT    ----------        AA  TC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810587

TACTCCCTCCGTCTCAAAAAAAAGACCGTTGTTGTTGACTTTCAGACATCTTGTTTGACCATCCGTCTTATTAAAATTTTTTGTATAAATATCCTCTATTTTGATATGACTTATTTGATCATTAGAGGTACTTTAATAATGATTTATCTATTTTAGAATTTACACAAAAATTTTGAATAAGACGAGTGGTCAAACATGATTGGTCAAAGTAAAAAACATCGGTCTGTTTGAGACGGAGGGAGTA

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