Plant MITE

SE2810590

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9595
Sorghum bicolor
SE2810590
Tc1/Mariner
St7
chromosome_1:1672702-1672970
TA
TACTCCCTCCGTATAGGATTTAGATGTCGTTTTGGACAAGG

Secondary structure and sequence

TSD TIR

5'

3'

         C      GA              T     AG TTTG    AAACA  G          TATAAATCA   --    CTTTTAAATTGTTGAGTTTGCAAATGTGAAAATTATATGAATAGATTTGTCTTGA
TACTCCCTC GTATAG  TTTAGATGTCGTTT GGACA  G    GGTC     TT AGAATATAAT         TCA  ATAA                                                       
||||||||| ||||||  |||||||||||||| |||||  |    ||||     || ||||||||||         |||  ||||                                                        
ATGAGGGAG CATATC  AAATCTACAGCAAA CCTGT  C    CCAG     AG TTTTGTGTTG         GGA  ATAA                                                       
         A      AT              T     CG TGTG    -----  G          ----CAACT   GA    AAATATTTTTATAAATCCTTTTTTACTATATACATATGAAAATACTTTCATAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810590

TACTCCCTCCGTATAGGATTTAGATGTCGTTTTGGACAAGGTTTGGGTCAAACATTGAGAATATAATTATAAATCATCAATAACTTTTAAATTGTTGAGTTTGCAAATGTGAAAATTATATGAATAGATTTGTCTTGAAAAATACTTTCATAAAAGTATACATATATCATTTTTTCCTAAATATTTTTATAAAAATAAGAGGTCAACGTTGTGTTTTGGAGACCGTGTCGCTGTCCTAAACGACATCTAAATACTATACAGAGGGAGTA

Copy Cancel