SE2850592

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9597
  • Sorghum bicolor
  • SE2850592
  • PIF/harbinger
  • To1
  • chromosome_10:54181398-54181646
  • TTA
  • AGGCCTTGTTTAGGTGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                  AAAAGTTT -        GACACTGTAGCATTTTCGTTTTTATTTGACAAACATTGTCTAATTATGGAGTAACTAGGCTTAAAAGATTCGTCTCGTGATTTACAGGTA
  AGGCCTTGTTTAGGTGCA        T TGGATTTT                                                                                          
  ||||||||||||||||||        | ||||||||                                                                                          A
  TCCGGAACAAATCTATGT        G TTTTTGGG                                                                                          
AT                  -------G G        TTTTGAAATGTTCTAAGAGGCAGTGTAGCTTAGAACGCCGTGTACGTACCTCATAATTTATATCTATTTTTCTTATTGATTAACGTGTCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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