Plant MITE

SE2850594

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9599
Sorghum bicolor
SE2850594
PIF/harbinger
To72
chromosome_3:54965579-54965827
TTA
AGGCCTTGTTTACTT

Secondary structure and sequence

TSD TIR

5'

3'

TT               CCCC   TAT            TTCAAATTTT    C    CAAATCTTATATCACATGTATGGAGCATTAAATATAAATAAAAAAGATAACTAATTATACACAGTTTACA
  AGGCCTTGTTTACTT    AAA   TTTGCAAGATGT          CCGT ACAT                                                                      
  |||||||||||||||    |||   ||||||||||||          |||| ||||                                                                       
  TCCGGAACAAATGAA    TTT   AAACGTTTTGCA          TCGT GAAA                                                                      
AT               ---T   TTT            ---TTTGTCA    -    GCAAACATAAATTGTTTATAACAAATTAGTATCCGATTGATCCAAATTTTCTAATCAGAGTGCTTAATGC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850594

TTAGGCCTTGTTTACTTCCCCAAATATTTTGCAAGATGTTTCAAATTTTCCGTCACATCAAATCTTATATCACATGTATGGAGCATTAAATATAAATAAAAAAGATAACTAATTATACACAGTTTACACGTAATTCGTGAGACTAATCTTTTAAACCTAGTTAGCCTATGATTAAACAATATTTGTTAAATACAAACGAAAGTGCTACTGTTTACGTTTTGCAAATTTTTTTAAGTAAACAAGGCCTTA

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