Plant MITE

SE2850601

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9606
Sorghum bicolor
SE2850601
PIF/harbinger
To2
chromosome_7:52287649-52287897
CAA
GGCCTTGTTTAGTTCCAAAATATTTTGCAAAAT

Secondary structure and sequence

TSD TIR

5'

3'

CAA                -    TA           -----      TGTAGCTTTTTCGTTTGTATTTGACAAATATTGTCCAATCATGGACTAACTAGGCTCAAAAGATTTGTCTCGTCAATTC
   GGCCTTGTTTAGTTCC AAAA  TTTTGCAAAAT     GGACAC                                                                               
   |||||||||||||||| ||||  |||||||||||     ||||||                                                                               C
   CCGGAACAAATCAAGG TTTT  AAAACGTTTTA     TCTAAG                                                                               
AAC                G    TA           AAAAG      GGGCAGTGTAGCTTAGAAATCTGTGTACGTACTTCATGATTTATATCTGTTTTTATTTTTGATTAACGTGTCAAACCAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850601

CAAGGCCTTGTTTAGTTCCAAAATATTTTGCAAAATGGACACTGTAGCTTTTTCGTTTGTATTTGACAAATATTGTCCAATCATGGACTAACTAGGCTCAAAAGATTTGTCTCGTCAATTCCGACCAAACTGTGCAATTAGTTTTTATTTTTGTCTATATTTAGTACTTCATGCATGTGTCTAAAGATTCGATGTGACGGGGAATCTGAAAAATTTTGCAAAAATTTTTGGGAACTAAACAAGGCCCAA

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