SE2850602

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9607
  • Sorghum bicolor
  • SE2850602
  • PIF/harbinger
  • To1
  • chromosome_1:8581820-8582068
  • TAA
  • AGGCCTTGTTTAGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA              TACA         -CCAAAACTTTA      ---  CCCATCACATCGAATCTTGCCGCACATGCATGAAACATTAAATATAGATAAAAAAGATAACTAATTGCACAGTTTA
  AGGCCTTGTTTAGA    TCCAAAAAT            CAAGAT   TT                                                                            
  ||||||||||||||    |||||||||            ||||||   ||                                                                            C
  TCCGGAACAAATCT    AGGTTTTTG            CTGTGA   CG                                                                            
AA              ----         AAAAACCTAAAA      CAT  TGAAAGCAAAAATAAACTGTTTGTGACAGATTAGTACCTCGTTGATCCGAATTTTATAAGCAGAGCACTAAATGTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3