SE2850609

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9614
  • Sorghum bicolor
  • SE2850609
  • PIF/harbinger
  • To1
  • chromosome_1:1308983-1309228
  • TTA
  • AGGCCTTGTTTAGTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT             T  ACCCAAAAACAAAAACTTTT      -- TTC GTCACATCGAATCTTGCGGCACATACATGGAGCATTAAATATAGATAGAAACAAAAACTAATTATACAGTTTGTCTGTAA
  AGGCCTTGTTTAG TC                    CAAGAT  T   C                                                                                
  ||||||||||||| ||                    ||||||  |   |                                                                                 
  TCCGGAACAAATC AG                    CTTTTA  A   T                                                                                
AT             T  -----------ACTAAAAAA      AA --- TGTGACATCGTAAAAGCAAAAATAAACTGTTTGTAACAGGTTGATACCTCATTGATCCGAATTTTCTAAGCAAAGCGCTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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