Plant MITE

SE2850611

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9616
Sorghum bicolor
SE2850611
PIF/harbinger
To2
chromosome_1:7343869-7344117
TAA
AGGCCTTGTTTACTTC

Secondary structure and sequence

TSD TIR

5'

3'

TA            C   CATCCAAAAAC   AAA      AAGATTCCCCGTCACATCGAATCTATAGACGCATGCATGAAATACTAAATATAGACGAAAATAAAAACTAATTGCACAGTTTGGTCGAAA
  AGGCCTTGTTTA TTC           GTA   ATTTTC                                                                                          
  |||||||||||| |||           |||   ||||||                                                                                           
  TCCGGAACAAAT AAG           TAC   TGCTTT                                                                                          
AA            C   -----------   --T      TGTAAAGCACTGTGACATCGTGAAAGCAAACAAACACCATTAATAACAAGTTGATACATTATTGATCCGAGTTTTCTAAGCAGAGCAGTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850611

TAAGGCCTTGTTTACTTCCATCCAAAAACGTAAAAATTTTCAAGATTCCCCGTCACATCGAATCTATAGACGCATGCATGAAATACTAAATATAGACGAAAATAAAAACTAATTGCACAGTTTGGTCGAAATTGACGAGACGAATCTTTTGAGCCTAGTTATTACATAGTTGAACAATAATTACCACAAACAAACGAAAGTGCTACAGTGTCACGAAATGTTTTCGTTCATGAACTAAACAAGGCCTAA

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