Plant MITE

SE2850615

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9620
Sorghum bicolor
SE2850615
PIF/harbinger
To23
chromosome_1:22357559-22357864
TTA
AGGGGGTGTTTAGTTCCCC

Secondary structure and sequence

TSD TIR

5'

3'

TT                   TTTTT   ---CA      - -            CTA --     TGCAAAATGGAACTAAACACCATGCAAAATTTTTGGCAAAAAGGTAATTATTCTCCATTTTGGATTTTGGCCTCAAGAGGCCAAAAAAACCC
  AGGGGGTGTTTAGTTCCCC     TCC     AAAAAT T TTGGGTTTTGGT   T  CATTT                                                                                            
  |||||||||||||||||||     |||     |||||| | ||||||||||||   |  |||||                                                                                            A
  TCCCCCACAAATCAAGGGG     AGG     CGTTTT C GTTGATGAAACC   T  CTACT                                                                                            
AT                   -TCTT   TTTTA      A G            --- CA     TTACGTTTTACGGTTTTAAAAGTCCCAGTACAAATTAAGGTAGGTTTTACGTCTTAAATAACGGGAGTACTCTCGGAGAAACTCCGAGAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850615

TTAGGGGGTGTTTAGTTCCCCTTTTTTCCCAAAAAATTTTGGGTTTTGGTCTATCATTTTGCAAAATGGAACTAAACACCATGCAAAATTTTTGGCAAAAAGGTAATTATTCTCCATTTTGGATTTTGGCCTCAAGAGGCCAAAAAAACCCAAAAAGAGCCTCAAAGAGGCTCTCATGAGGGCAATAAATTCTGCATTTTGGATGGAATTAAACATGACCCTGAAAATTTTGGCATTTTGCATTTCATCACTCCAAAGTAGTTGGCATTTTGCATTTTGGATTCTGGGGAACTAAACACCCCCTTA

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