Plant MITE

SE2850618

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9623
Sorghum bicolor
SE2850618
PIF/harbinger
To16
chromosome_2:5420931-5421142
TAA
AGGGCACTCACAATGCAAGACTCTATCACAGAGTC

Secondary structure and sequence

TSD TIR

5'

3'

TA                 A          C      CAAGA    T ATTACATATTATTTATGGTATTTTGCTGATGTGGCAGCATATTTATTGAAGAAAGAGGTAG
  AGGGCACTCACAATGCA GACTCTATCA AGAGTC     CAGT A                                                             
  ||||||||||||||||| |||||||||| ||||||     |||| |                                                              
  TCCCGTGAGTGTTACGT CTGAGATAGT TCTCAG     TTTC A                                                             
AA                 -          A      ----A    - ATAAATAATGGAGCTTGTTACACCTGAACCTCAGATTTATTCTGAACCTCAGAATAAAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850618

TAAGGGCACTCACAATGCAAGACTCTATCACAGAGTCCAAGACAGTTAATTACATATTATTTATGGTATTTTGCTGATGTGGCAGCATATTTATTGAAGAAAGAGGTAGAAAAAATAAGACTCCAAGTCTTATTTAGACTCCAAGTCCACATTGTTCGAGGTAATAAATAACTTTAGACTCTATGATAGAGTCTGCATTGTGAGTGCCCTAA

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