SE2850619

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9624
  • Sorghum bicolor
  • SE2850619
  • PIF/harbinger
  • To50
  • chromosome_8:3563426-3563717
  • TAA
  • AGAGCATCTTCAAGAGTCTTTGTAAATTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA      T         T    G       CAC      AATCATCATTTAGAGAACCATTTCCATAAAAATGCTTTCTATATCTCTTCACTCTCCAACAACTTTTCTGTCTCTCGTGCGCACTCTAGAGAGTCATTCTCATCTTC
  AGAGCA CTTCAAGAG CTTT TAAATTT   TCTCTA                                                                                                           
  |||||| ||||||||| |||| |||||||   ||||||                                                                                                           T
  TCTCGT GAGGTTCTC GAGA ATTTAGG   AAGGAT                                                                                                           
AA      T         T    G       ---      TTACGATCCTTATTTCTAAAACCACTTTTTAATAGGAGGTTGTCGAACAGATTTACCAATATATTTATATCGGTAGAAGATAAAGTCTAACAAGCGATCGATTTTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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