SE2850620

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9625
  • Sorghum bicolor
  • SE2850620
  • PIF/harbinger
  • To14
  • chromosome_3:15084073-15084320
  • TTA
  • AGGCCTTGTTTAGTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                T    AGATTTCGGATTTCGGTACTGTAGCACTTTCGTTTGTTTGTGATAAATATTATCCAATTATGGACTAACTAGGCTCAAAAGATTCGTCTCGCGATTTCCAG
  AGGCCTTGTTTAGTTC GAAA                                                                                                     
  |||||||||||||||| ||||                                                                                                     C
  TCCGGAACAAATCAAG TGGG                                                                                                     
AT                -    TTTTTCGTTTTTCAAAAGTTTTAAAGAGCAGTGTAGCTTAGAACACCGTGTACGTACTTCGTAATTTATATCTGCTTTCGTTTTTGATTAATGTGTCAACT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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