SE2850621

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9626
  • Sorghum bicolor
  • SE2850621
  • PIF/harbinger
  • To36
  • chromosome_1:16580547-16580784
  • TAA
  • AGGCCTTGTTTAGTTCGCAAAAATTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                 CA        --------C    TTCCCCATCACATCGAATCTTTGGTCGTATGCATGGAGCATTAAATAAAGATAAAAATAAAAACTAATTACACAGTTTAAC
  AGGCCTTGTTTAGTTCG  AAAATTTT         AAGA                                                                                 
  |||||||||||||||||  ||||||||         ||||                                                                                 T
  TCCGGAACAAATCAAGC  TTTTAAAA         TGAT                                                                                 
AA                 -A        CCCAAAAAC    GACATCGTGAAAGCAAAAATAAACTGTTTGTAACAGGTTAGTGTCTCATTGATCCGAGTTTTCTAAGTAGAGTGTTTAAAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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