SE2810627

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9632
  • Sorghum bicolor
  • SE2810627
  • Tc1/Mariner
  • St10
  • chromosome_1:50424148-50424411
  • TA
  • TACTCCCTGCATCCACAAATAAATGTACATCTAGTTTTTTGAAAAGTCA

Secondary structure and sequence

TSD    TIR
5'



3' 
        GCA  C     T            A T       A      AACC       -----       -C        AT  A     AC       --C   A    T    -     A   TTAGATTGAGCA
TACTCCCT   TC ACAAA AAATGTACATCT G TTTTTGA AAGTCA    TTTTTAA     GTTTGAC  AAATATAT  AA AATAT  TAATATT   ATC TATG ATAA TATGT TCA            
||||||||   || ||||| |||||||||||| | ||||||| ||||||    |||||||     |||||||  ||||||||  || |||||  |||||||   ||| |||| |||| ||||| |||            T
ATGAGGGA   AG TGTTT TTTACGTGTAGA C AAAGGCT TTCAGT    AAAAATT     TAAACTG  TTTATGTA  TT TTATA  GTTATAA   TAG ATAC TATT ATATA TAC            
        GAC  C     -            A T       C      --AA       TTTTT       AT        GT  A     --       ATA   -    T    C     A   TTTCATATAAAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3