Plant MITE

SE2850630

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9635
Sorghum bicolor
SE2850630
PIF/harbinger
To65
chromosome_2:68608635-68608985
TTA
AGGCCAGTCTCAGTAG

Secondary structure and sequence

TSD TIR

5'

3'

TT              -  -C       ------     AC  ----------  TCCAAAATAAATCCGCTGACAAGGCATCAATGAAACGAATAATGAAACAACCTCCACAATGCATGAGTTGCATCTTAACGTTTCCTAGGCTGGGCAAAACATTTAATTACTGCAAAATAATTGGATCATA
  AGGCCAGTCTCAGT AG  TCGTTTC      AATGC  TG          TT                                                                                                                                  
  |||||||||||||| ||  |||||||      |||||  ||          ||                                                                                                                                  T
  TCCGGTCAGAGTCA TC  AAAGTGG      AGTAC  GT          TC                                                                                                                                  
AT              C  CC       TCCTAC     --  ATAAATAATC  GCAGTACAGTTGTCTTAACGTGAAAAACGTATTTTGTTTCTCCTCTCACTTCCTTCGACGCCCGTAACAAAGGGTGCGCCACTTTACCTTACTTTAGGGGTGACTCCCGATTTAGCAAAATGGTAGAACG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850630

TTAGGCCAGTCTCAGTAGCTCGTTTCAATGCACTGTTTCCAAAATAAATCCGCTGACAAGGCATCAATGAAACGAATAATGAAACAACCTCCACAATGCATGAGTTGCATCTTAACGTTTCCTAGGCTGGGCAAAACATTTAATTACTGCAAAATAATTGGATCATATGCAAGATGGTAAAACGATTTAGCCCTCAGTGGGGATTTCATTCCATTTCACCGCGTGGGAAACAATGCCCGCAGCTTCCTTCACTCTCCTCTTTGTTTTATGCAAAAAGTGCAATTCTGTTGACATGACGCTCTAATAAATATGCATGACATCCTGGTGAAACCCTCACTGAGACTGGCCTTA

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